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June 19, 2013
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Disease Barcode


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  The History of Barcodes

National Nanotechnology Initiative



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Searching for signs of disease in our bodies might one day be almost as easy as scanning a barcode at the supermarket. This ScienCentral News video has more.

Quick-Shop Diagnosis

Barcodes have made shopping quick and easy. Soon "biological barcodes" could make diagnosing disease almost as convenient.

Currently, both doctor and patient must wait several days before complicated, slow and often expensive tests can tell them what's wrong.

So Northwestern University chemist Chad Mirkin, director of Northwestern's Institute for Nanotechnology Center, has developed a test that can very quickly detect tiny amounts of protein in blood, or other body fluids, that indicate diseases. The test would be able to spot the proteins even when they are present in concentrations that pass under the radar of current tests.

"It's simple, very fast… and you have a system that is six orders of magnitude more sensitive than anything out there," Mirkin explains. "It is going to provide many opportunities in terms of developing new tests for new diseases, and creating tests that allow us to follow and treat existing diseases in a much more efficient manner."





Mirkin — who's group has just been awarded money from the National Cancer Institute to establish one of seven "Centers of Cancer Nanotechnology Excellence" for research — first began by developing tiny particles that indicate the presence of infectious diseases and bioterror agents simply by visibly changing color.





Mirkin and his team have since been working with the same technology to try to diagnose everyday diseases.

As reported in Discover magazine, they created tiny gold nano-particles — hundreds of thousands of time smaller than the width of a human hair. When the particles are released in a blood, urine, or saliva sample taken from a patient, the genetic material latches on to any disease proteins they find. Proteins, the building blocks of living things, can serve as fingerprints for diseases.

PSA Protein
Protein molecular structure
Protein Data Bank, Rutgers University
"The nano-particle is coded with many strands of DNA which are identical, which are the barcodes," Mirkin explains. "When the nano-particle binds to the protein target of interest, it releases these mini barcodes for every protein molecule that is in solution, so that you're getting amplification," allowing the researchers to easily scan for disease with currently available DNA detection techniques.




"We have a chip that has many different spots of DNA on it that are designed to recognize all of the possible barcodes that are in the mixture," Mirkin says. "It binds the right spot and provides a signal that can be easily read with a screener."

Instead of a price popping up, a color signal appears, showing the presence of a specific disease.

Although not publicly available yet, Mirkin's test has been very successful in spotting the target proteins, often referred to as biomarkers, for a variety of diseases, in lab experiments. He says, "Biomarkers for lots of different diseases, including prostate cancer, come in the form of proteins."

Prostate cancer was, in fact, the first disease they pitted their nano-particles against. The second leading cause of cancer deaths for American men, prostate cancer is one of several serious illnesses that can be detected early if doctors see higher levels of certain proteins in the blood. For prostate cancer, levels of the protein prostate-specific antigen, or PSA can signal the disease. But, "after treatment for prostate cancer, normally PSA cannot be detected again until it reaches a fairly high threshold. So with this test, PSA can be accessed at much lower levels to say the cancer is coming back and treat it," Mirkin says.

A similar biomarker in the blood has now been identified for ovarian cancer.

More recently Mirkin's test has picked up extremely low concentrations of a protein related to Alzheimer's disease. "The marker is found in the brain, but it's not much use when you can only test for it with a brain biopsy," he explains. "We now know it is also present in spinal fluid."

With many other disease biomarkers that could be detected, Mirkin hopes his test will one day allow doctors to test for dozens of diseases at the same time, and give patients results in a matter of minutes.

This research has been published in Talanta, 15 September, 2005, and the 15 February, 2005, issue of Proceedings of the National Academy of Sciences. It was funded by the National Science Foundation, the National Institutes of Health, and the U.S. Department of Defense.


 
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